Overview Sequencing Summary Assembly Summary Repeat masking GeMoMa prediction MAKER prediction Non-coding RNA genes Functional Protein Classification Protein domain annotation Comparative Genomics DOGMA analysis BUSCO analysis

Summary

Prediction	Number of genes
tRNA	1,180
miRNA	57
rRNA	55
snRNA	23
snoRNA	12
Others	67
Total	1,395

Results

Download detected nc-RNA-Sequences results (1,395 sequences): P.cal ncRNA genes.fasta

Download detected nc-RNA-Annotation results: P.cal ncRNA annotation.gff

Download detected t-RNA-Annotation results: P.cal tRNA annotation.gff

Discussion

The detection of tRNAs resulted in an overrepresentation of Thr-tRNAs. Surprisingly the Thr-tRNA with the anticodon GGT occupies the main part of this tRNA gene class. 22 of the predicted tRNAs contain introns.

Table 1: Comparison of predicted parts of the Spliceosome within nc-RNA gene predictions from different species.

Figure 1: Distribution of predicted tRNA genes.

Figure 2: Distribution of Thr tRNA predictions through the genome assembly (Supernova 2.1 75x) and the length of the contigs.