FastQCFastQC Report
Thu 20 Sep 2018
170317_Hiseq3000_l1_004_Dr_Wojtek_Ant_MAZ_1410_1_Ant_MAZ_1410_1_S1_L001_R2_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename170317_Hiseq3000_l1_004_Dr_Wojtek_Ant_MAZ_1410_1_Ant_MAZ_1410_1_S1_L001_R2_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362874432
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTAGGG1460250.07.09201216-17
GGTCGCC1895200.05.89977842-43
TAGGGAA2049100.05.472639618-19
GCCGTAT1976050.05.42285246-47
CGTGTAG2079200.05.32335614-15
GTGGTCG2165500.05.277269440-41
GTGTAGA2284950.05.07880728-29
Produced by FastQC (version 0.11.5)