FastQCFastQC Report
Thu 20 Sep 2018
170317_Hiseq3000_l1_004_Dr_Wojtek_Ant_MAZ_1410_1_Ant_MAZ_1410_1_S1_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filename170317_Hiseq3000_l1_004_Dr_Wojtek_Ant_MAZ_1410_1_Ant_MAZ_1410_1_S1_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362874432
Sequences flagged as poor quality0
Sequence length100
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGACCA1492150.07.286500532-33
GTATGCC1626100.06.799593444-45
ACTCCAG1658700.06.533580322-23
CTGCTTG1821450.06.190963356-57
TCCAGTC1797050.06.149334424-25
CAGTCAC1821250.06.089564326-27
GTCACTG1822400.06.086988428-29
CACTGAC1821800.06.06195230-31
GCCGTCT1845600.06.057817548-49
AGCACAC2142550.05.9886369
GAACTCC1887850.05.91861320-21
CTGAACT1929250.05.809719618-19
GAGCACA2250850.05.7839858
AGAGCAC2291500.05.69368177
ATGCCGT2076050.05.514594646-47
GACCAAT1868700.05.40743434-35
CCAATCT1898450.05.376888336-37
CCGTCTT2030850.05.31167177
TATGCCG2112850.05.1053423
ACGTCTG2247200.05.091758314-15
Produced by FastQC (version 0.11.5)