Running dogma.py v3.4 proteome -i None -s 3 -c 2 -a polished_assembly_75x_round3.fasta.all.maker.proteins.uniq.fasta.rad -r insects -o polished_assembly_75x_round3.fasta.all.maker.proteins.uniq.fasta_out.txt -m 32 -cov 0.5

Statistics of the completeness of the proteome 
- polished_assembly_75x_round3.fasta.all.maker.proteins.uniq.fasta.rad -
based on 2673 single-domain Conserved Domain Arrangements (CDAs) and 2068 multiple-domain CDAs
 (insects was used as core set for this analysis):

CDAsize	#Found	#Expct	%Completeness

1	2596	2673	97.12
2	1453	1520	95.59
3	517	548	94.34

Total	4566	4741	96.31


- Key -
CDAsize: The size of the Conserved Domain Arrangements (CDAs) that were found to be conserved
	in the core species.
#Found: The number of these CDAs that were found in
	polished_assembly_75x_round3.fasta.all.maker.proteins.uniq.fasta.rad.
#Expct: The number of expected CDAs (= all CDAs
	 that were found to be conserved among the core species).
%Completeness: How many of the CDAs were found in
	polished_assembly_75x_round3.fasta.all.maker.proteins.uniq.fasta.rad (in percent).

Missing CDAs of size 1:
#Found/#Expct Domain-ID(s)
12 / 14	PF00022
0 / 1	PF00119
1 / 2	PF00253
0 / 1	PF00316
2 / 4	PF00383
1 / 2	PF00403
0 / 1	PF00990
0 / 1	PF01086
0 / 1	PF01097
0 / 1	PF01106
0 / 1	PF01422
2 / 3	PF01480
1 / 2	PF01608
0 / 1	PF01775
2 / 3	PF01841
0 / 1	PF01876
3 / 4	PF01920
0 / 1	PF01984
0 / 1	PF02078
0 / 2	PF02135
0 / 1	PF02172
1 / 2	PF02196
1 / 2	PF02201
0 / 1	PF02262
2 / 3	PF02319
3 / 4	PF02469
7 / 9	PF02535
3 / 4	PF02883
0 / 1	PF02898
2 / 3	PF03016
1 / 2	PF03061
1 / 2	PF03159
1 / 2	PF03985
2 / 3	PF04560
0 / 1	PF04904
0 / 1	PF05741
0 / 1	PF06001
0 / 1	PF06628
0 / 1	PF07542
0 / 1	PF07657
0 / 1	PF08146
0 / 1	PF08214
0 / 1	PF08510
0 / 1	PF08534
0 / 1	PF08806
0 / 1	PF08916
0 / 1	PF09058
2 / 3	PF09258
0 / 1	PF09430
0 / 1	PF09812
0 / 1	PF10243
0 / 1	PF10447
0 / 1	PF10474
3 / 4	PF10584
1 / 2	PF11878
0 / 1	PF12037
0 / 1	PF12656
0 / 1	PF13867
1 / 2	PF13893
0 / 1	PF13925
0 / 1	PF14906
0 / 1	PF14975
0 / 1	PF15114
0 / 1	PF15279
1 / 2	PF15613
1 / 2	PF16027
0 / 1	PF16063
0 / 1	PF16088
1 / 2	PF16366
0 / 1	PF16564
0 / 1	PF16656
0 / 1	PF16953
0 / 1	PF16978
0 / 1	PF17034
0 / 1	PF17749
1 / 2	PF17867
0 / 1	PF18800

Missing CDAs of size 2:
#Found/#Expct Domain-ID(s)
0 / 1	PF00009 ; PF03143
0 / 1	PF00013 ; PF00270
3 / 4	PF00041 ; PF00102
0 / 1	PF00063 ; PF00612
0 / 1	PF00069 ; PF00780
0 / 1	PF00076 ; PF01805
0 / 1	PF00076 ; PF17780
1 / 2	PF00084 ; PF00754
0 / 1	PF00364 ; PF08326
0 / 1	PF00400 ; PF00160
0 / 1	PF00400 ; PF00439
0 / 1	PF00439 ; PF06001
2 / 3	PF00562 ; PF04560
0 / 1	PF00595 ; PF00788
0 / 1	PF00612 ; PF00784
0 / 1	PF00651 ; PF12796
0 / 1	PF00658 ; PF00632
0 / 1	PF00754 ; PF00059
0 / 1	PF00788 ; PF00617
0 / 1	PF01363 ; PF12210
0 / 1	PF01841 ; PF03835
0 / 1	PF02078 ; PF02750
0 / 1	PF02135 ; PF02172
0 / 1	PF02172 ; PF00439
2 / 3	PF02198 ; PF00178
0 / 1	PF02204 ; PF00788
0 / 1	PF02207 ; PF13764
1 / 2	PF02785 ; PF00364
0 / 1	PF02898 ; PF00258
2 / 3	PF03016 ; PF09258
1 / 2	PF03159 ; PF17846
0 / 1	PF04053 ; PF06957
0 / 1	PF04904 ; PF04905
0 / 1	PF05089 ; PF12972
0 / 1	PF06001 ; PF08214
1 / 2	PF06472 ; PF00005
0 / 1	PF07651 ; PF01608
1 / 2	PF07728 ; PF17867
0 / 2	PF08659 ; PF00550
0 / 1	PF08712 ; PF01106
0 / 1	PF08916 ; PF00169
0 / 1	PF10243 ; PF17749
3 / 4	PF10584 ; PF00227
1 / 2	PF11717 ; PF17772
0 / 1	PF11878 ; PF14429
0 / 1	PF12037 ; PF00004
0 / 1	PF12349 ; PF00368
0 / 1	PF12349 ; PF00400
0 / 1	PF12473 ; PF01302
1 / 2	PF12796 ; PF11904
0 / 1	PF12796 ; PF11936
0 / 1	PF13499 ; PF13833
0 / 1	PF13532 ; PF08241
0 / 1	PF13621 ; PF17811
0 / 1	PF13646 ; PF18829
0 / 1	PF14560 ; PF01302
0 / 1	PF14570 ; PF00076
0 / 1	PF15916 ; PF00293
0 / 1	PF16179 ; PF12796
1 / 2	PF16367 ; PF16366
0 / 1	PF16656 ; PF00149
0 / 1	PF17297 ; PF00821
3 / 4	PF17772 ; PF01853
0 / 1	PF17865 ; PF07728
1 / 2	PF17867 ; PF07728
0 / 1	PF18375 ; PF13907

Missing CDAs of size 3:
#Found/#Expct Domain-ID(s)
0 / 1	PF00013 ; PF00270 ; PF00271
0 / 1	PF00063 ; PF00612 ; PF00784
0 / 1	PF00084 ; PF00754 ; PF00059
0 / 1	PF00271 ; PF18375 ; PF13907
0 / 1	PF00364 ; PF08326 ; PF01039
0 / 1	PF00439 ; PF06001 ; PF08214
0 / 1	PF00554 ; PF16179 ; PF12796
0 / 1	PF00595 ; PF00788 ; PF00617
0 / 1	PF00615 ; PF00069 ; PF00169
0 / 1	PF00618 ; PF00595 ; PF00788
0 / 1	PF00651 ; PF12796 ; PF01363
0 / 1	PF00754 ; PF00059 ; PF00084
0 / 1	PF00784 ; PF09379 ; PF00373
0 / 1	PF00790 ; PF01363 ; PF12210
0 / 1	PF01841 ; PF03835 ; PF04721
0 / 1	PF02135 ; PF02172 ; PF00439
0 / 1	PF02172 ; PF00439 ; PF06001
0 / 1	PF02785 ; PF00364 ; PF08326
1 / 2	PF02786 ; PF02785 ; PF00364
0 / 1	PF02898 ; PF00258 ; PF00667
0 / 1	PF03159 ; PF17846 ; PF18332
1 / 2	PF07679 ; PF13927 ; PF00041
0 / 1	PF07728 ; PF17865 ; PF07728
1 / 2	PF07728 ; PF17867 ; PF07728
0 / 1	PF08916 ; PF00169 ; PF00017
1 / 2	PF11717 ; PF17772 ; PF01853
0 / 1	PF11878 ; PF14429 ; PF06920
0 / 1	PF13832 ; PF00439 ; PF00855
0 / 1	PF15613 ; PF00628 ; PF00439
0 / 1	PF16656 ; PF00149 ; PF14008
0 / 1	PF17865 ; PF07728 ; PF17867