NEWS
2026-01-22
"Catch-Up Weight Gain and Gut Microbiota Development in Full-Term
Small for Gestational Age Children During the First Year of Life -
A Prospective Cohort Study" - in American Journal of Human Biology
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2025-12-29
"Transformer-Based Classification of Transposable Element Consensus
Sequences with TEclass2" has been published in MDPI Biology.
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2025-08-24
"The Synchrony of STARD4-AS1 and H19 Downregulation with Cardiomyocytes Cell Cycle Arrest"
has been published by Biology of the Cell.
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2025-08-06
"Prognostic marker Musashi-2 modulates DNA damage response and radioresistance in diffuse large B-cell lymphoma"
has been published by Frontiers in Cell and Developmental Biology.
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2025-06-18
"Evaluating the Effectiveness of Various Small RNA Alignment Techniques in Transcriptomic Analysis by Examining Different Sources of Variability Through a Multi-Alignment Approach"
has been published by Methods and Protocols Journal.
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2025-03-21
"Musashi inhibitor Ro 08-2750 attenuates triple-negative breast cancer cell proliferation and migration and acts as a novel chemo- and radiosensitizer"
has been published by Biomedicine & Pharmacotherapy.
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2024-12-31
"Development of a new data management system for the study of the
gut microbiome of children who are small for their gestational
age" has been published by Computational and Structural Biotechnology.
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2024-12-30
"Animal and vegetal materials of mouse oocytes segregate at first
zygotic cleavage: a simple mechanism that makes the 2-cell
blastomeres differ reciprocally from the start" has been published by Molecular
Human Reproduction.
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2024-11-04
"miR-193b-5p and miR-374b-5p Are Aberrantly Expressed in Endometriosis
and Suppress Endometrial Cell Migration In Vitro" has been published in Biomolecules.
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2024-06-07
"Interplay of miR-542, miR-126, miR-143 and miR-26b with PI3K-Akt
is a Diagnostic Signal and Putative Regulatory Target in
HPV-Positive Cervical Cancer"
has been published by Biochemical Genetics.
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2024-02
"NewickTreeModifier: a simple web page to prune and modify Newick
trees" has been published in Journal of Heredity.
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2023-08-28
"The complete sequence of a human Y chromosome" by T2T Consortium
has been published by Nature.
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Contact
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Education
- since 2014: Member of the Münster Graduate School of Evolution (MGSE), Münster, Germany
- Personal Profile: Tabea Kischka
- since 2014: PhD student Institute of Bioinformatics at Univeristy of Münster, Germany
- Advisor: Wojciech Makalowski
- 2011-2014: Studies of Biology (M.Sc.), Univeristy of Münster, Germany
- Thesis: "Ancient Exonisations of Transposed Elements in Retropseudogenes", supervisor: Jürgen Schmitz
- 2008-2011: Studies of Biology (B.Sc.), Univeristy of Münster, Germany
- Thesis: "Comparative Metagenomics along a Temperature and Nutrient Gradient: A Lesson from Bison Pool Hot Spring, YNP", supervisor: Claudia Acquisti
Research projects
- upstream open reading frames (uORFs) and cancer
Publications
- Shabardina, V, Kischka, T, Kmita, H, Suzuki, Y, Makalowski, W "Environmental adaptation of Acanthamoeba castellanii and Entamoeba histolytica at genome level as seen by comparative genomic analysis." (2018) International Journal of Biological Sciences
- Schulz, J, Mah, N, Neuenschwander, M, Kischka, T, Ratei, R, Schlag, P M, ... Wethmar, K "Loss-of-function uORF mutations in human malignancies." (2018) Scientific Reports
- Makalowski W, Kischka T, Makalowska I "Contribution of Transposable Elements to Human Proteins" (2017) eLS
- Kuritzin A, Kischka T, Schmitz J, Churakov G "Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data." (2016) PLoS Computation Biol 12:e1004812
- Jakalski M, Wakaguri H, Kischka TG, Nishikawa Y, Kawazu S, Matsubayashi M, Kawahara F, ... Yamagishi J "DB-AT: a 2015 update to the Full-parasites database brings a multitude of new transcriptomic data for apicomplexan parasites" (2015) Nucleic Acids Res. 2015 Jan;43(Database issue):D631-6
Attended Conferences and Workshops
- June 27-July 1st, 2016:
EMBL-EBI Cancer Genomics Workshop, Hinxton, United Kingdom
- Participant
- March 9-11, 2015:
ISCB Africa ASBCB Conference on Bioinformatics, Dar es Salaam, Tanzania
- Participant
- June 30-July 1, 2014:
Fifth annual Münster Graduate School of Evolution Symposium, Münster
- Talk: "Analysing data from the MinION nanopore sequencer for tropical disease diagnostics"
- June 30-July 1, 2014:
Fourth annual Münster Graduate School of Evolution Symposium, Münster
- Participant
- May 12-15, 2014: 10th Annual BioMalPar Conference "Biology and Pathology of the
Malaria Parasite", Heidelberg
- Participant
- June 12-13, 2013:
Third annual Münster Graduate School of Evolution Symposium, Münster
- Participant
- September 10-14, 2012:
Jahrestagung der Gesellschaft für Ökologie (GfÖ) 2012, Lüneburg
- Participant
- Poster: "Hot spring metagenome reveals the impact of environmental nitrogen limitation on the elemental composition of proteins" (Höhmann T, Dick J, Acquisti C)
- July 27-29, 2012:
Workshop "Protein Evolution", München
- Participant and help with organization
- July 22-27, 2012:
Summer School "Protein Evolution", Frauenchiemsee
- Participant and help with organization
- June 27-28, 2012:
First EVOLGEN Conference 2012, Ciążeń, Poland
- Participant
- Talk (with Florian Wünnemann): „ACTransDB: An online database for Acanthamoeba castellanii transcripts“
- June 18-19, 2012:
Second annual Münster Graduate School of Evolution Symposium, Münster
- Participant
- Talk (with Florian Wünnemann): "Biogeochemistry meets molecular evolution via metagenomics: tracing nitrogen fluxes from ecosystems to genomes in microbial communities"
Teaching
- December 8-10, 2015: Bioinformatics practicals course teaching assistant
- October 28-31, 2014: Bioinformatics practicals course teaching assistant
- November 19-22, 2013: Bioinformatics practicals course teaching assistant
2018-05-22 14:29
