NEWS
2026-01-22
"Catch-Up Weight Gain and Gut Microbiota Development in Full-Term
Small for Gestational Age Children During the First Year of Life -
A Prospective Cohort Study" - in American Journal of Human Biology
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2025-12-29
"Transformer-Based Classification of Transposable Element Consensus
Sequences with TEclass2" has been published in MDPI Biology.
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2025-08-24
"The Synchrony of STARD4-AS1 and H19 Downregulation with Cardiomyocytes Cell Cycle Arrest"
has been published by Biology of the Cell.
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2025-08-06
"Prognostic marker Musashi-2 modulates DNA damage response and radioresistance in diffuse large B-cell lymphoma"
has been published by Frontiers in Cell and Developmental Biology.
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2025-06-18
"Evaluating the Effectiveness of Various Small RNA Alignment Techniques in Transcriptomic Analysis by Examining Different Sources of Variability Through a Multi-Alignment Approach"
has been published by Methods and Protocols Journal.
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2025-03-21
"Musashi inhibitor Ro 08-2750 attenuates triple-negative breast cancer cell proliferation and migration and acts as a novel chemo- and radiosensitizer"
has been published by Biomedicine & Pharmacotherapy.
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2024-12-31
"Development of a new data management system for the study of the
gut microbiome of children who are small for their gestational
age" has been published by Computational and Structural Biotechnology.
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2024-12-30
"Animal and vegetal materials of mouse oocytes segregate at first
zygotic cleavage: a simple mechanism that makes the 2-cell
blastomeres differ reciprocally from the start" has been published by Molecular
Human Reproduction.
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2024-11-04
"miR-193b-5p and miR-374b-5p Are Aberrantly Expressed in Endometriosis
and Suppress Endometrial Cell Migration In Vitro" has been published in Biomolecules.
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2024-06-07
"Interplay of miR-542, miR-126, miR-143 and miR-26b with PI3K-Akt
is a Diagnostic Signal and Putative Regulatory Target in
HPV-Positive Cervical Cancer"
has been published by Biochemical Genetics.
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2024-02
"NewickTreeModifier: a simple web page to prune and modify Newick
trees" has been published in Journal of Heredity.
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2023-08-28
"The complete sequence of a human Y chromosome" by T2T Consortium
has been published by Nature.
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Dr. Felix Manske
Contact
| Status: | Postdoctoral researcher |
| E-mail: | felix.manske@uni-muenster.de |
| Room: | 110.004 |
| Phone: | +49-251-8353007 |
Education
| 09/2024 | Dr. rer. nat., Münster Graduate School of Evolution, University of Münster |
| 06/2019: | Master of Science (Biosciences), University of Münster |
| 06/2018 - 09/2018: | Advanced Pharma Management Blue Belt Training, University of Münster |
| 11/2017 - 02/2018: | Industrial Pharma Management White Belt Training, University of Münster |
| 10/2016: | Training according to § 15 GenTSV, University of Münster |
| 08/2016: | Bachelor of Science (Biosciences), University of Münster |
Honors and Awards
| 01/2020: | Master Award from the German Society for Biochemistry and Molecular Biology |
Teaching
| 11/2019 - 02/2024: | Teaching assistant Bioinformatics 1 praticals (winter term) |
| 12/2021 - 10/2022: | Mentored Lynn Ogoniak during her master thesis
“Analysis of upstream open reading frames in human cancer genomes” |
| 02/2021 - 11/2021: | Supervised Lynn Ogoniak during her internship on uORF detection
and uORF evolutionary analysis |
| 11/2020 - 09/2021: | Mentored Marc-Nicolas Bendisch during his master thesis
“Benchmarking metagenomic tools for short and long reads” |
| 04/2021 - 06/2021: | Supervised Ina Schüßler during her research module on
SNP phasing in nanopore sequencing data |
Presentations
Oral Presentations
| Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Sep.) uORFdb: A central hub for upstream open reading frames. Lab meeting of Prof. Martin Frith's group, Kashiwa, Japan. |
| Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Mar.) uORFdb: A central resource for translational regulation by upstream open reading frames. Münster Evolution Meeting, Münster, Germany. |
| Manske, F. (2019, Sep.) Using UNIX on the command line. EvoPAD summer school Bioinformatics, Halberstadt, Germany. |
| Manske, F. (2019, Jul.) Introduction to the command line. Symposium and Workshop for Diagnosis-by-Sequencing using MinION, Hokkaido University, Sapporo, Japan. |
| Manske, F. (2019, Jul.) MetaGenomic analysis of short and long reads. Symposium and Workshop for Diagnosis-by-Sequencing using MinION, Hokkaido University, Sapporo, Japan. |
Poster Presentations
| Manske, F., Ogoniak, L., Jürgens, L., Grundmann, N., Makałowski, W. and Wethmar, K. (2023, Oct.) uORFdb: A central resource for translational regulation by upstream open reading frames. The 14th International Workshop on Advanced Genomics, Tokyo, Japan. |
| Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, Nov.) High-performance microbiome analysis with MetaG. Cold Spring Harbor Laboratory Conference Genome Informatics (virtual). |
| Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, Sep.) High-performance microbiome analysis with MetaG. Center for Molecular Medicine Cologne Symposium (virtual). |
| Manske, F., Bendisch, M.-N., Grundmann, N. and Makałowski, W. (2021, May) MetaGenomic analysis of short and long reads. London Calling (virtual). |
Publications
| Manske, Felix, Magdalena Durda-Masny, Norbert Grundmann, Jan Mazela, Monika Englert-Golon, Marta Szymankiewicz-Bręborowicz, Joanna Ciomborowska-Basheer, Izabela Makałowska, Anita Szwed, and Wojciech Makałowski. 2025. “Development of a New Data Management System for the Study of the Gut Microbiome of Children Who Are Small for Their Gestational Age.” Computational and Structural Biotechnology Journal 27 (January): 221–32. https://doi.org/10.1016/j.csbj.2024.12.031. Paper Tool Pre-print |
| Manske, Felix, Lynn Ogoniak, Lara Jürgens, Norbert Grundmann, Wojciech Makałowski, and Klaus Wethmar. 2023. “The New uORFdb: Integrating Literature, Sequence, and Variation Data in a Central Hub for uORF Research.” Nucleic Acids Research 51 (D1): D328–36. https://doi.org/10.1093/nar/gkac899. Paper Tool |
| Jürgens, Lara, Felix Manske, Elvira Hubert, Tabea Kischka, Lea Flötotto, Oliver Klaas, Victoria Shabardina, Christoph Schliemann, Wojciech Makałowski, and Klaus Wethmar. 2021. “Somatic Functional Deletions of Upstream Open Reading Frame-Associated Initiation and Termination Codons in Human Cancer.” Biomedicines 9 (6): 618. https://doi.org/10.3390/biomedicines9060618. Paper |
| Manske, Felix, Norbert Grundmann, and Wojciech Makałowski. 2020. “MetaGenomic Analysis of Short and Long Reads.” bioRxiv. https://doi.org/10.1101/2020.03.13.991190. Pre-print Tool |
| Shabardina, Victoria, Tabea Kischka, Felix Manske, Norbert Grundmann, Martin C. Frith, Yutaka Suzuki, and Wojciech Makałowski. 2019. “NanoPipe—a Web Server for Nanopore MinION Sequencing Data Analysis.” GigaScience 8 (2): giy169. https://doi.org/10.1093/gigascience/giy169. Paper Tool |
2025-01-10 16:24
